Package: AMISforInfectiousDiseases
Title: Implement the AMIS Algorithm for Infectious Disease Models
Version: 0.1.1
Authors@R: 
    c(person(given = "Evandro",
             family = "Konzen",
             role = c("aut"),
             comment = c(ORCID = "0000-0002-6275-1681")),
    person(given = "Renata",
           family = "Retkute",
           role = c("aut"),
           comment = c(ORCID = "0000-0002-3877-6440")),
    person(given = "Raiha",
           family = "Browning",
           role = c("aut"),
           comment = c(ORCID = "0000-0002-6175-2244")),
    person(given = "Thilbault",
           family = "Lestang",
           role=c("aut")),
    person(given = "Simon",
           family = "Spencer",
           role = c("aut", "cre"),
           email = "s.e.f.spencer@warwick.ac.uk",
           comment = c(ORCID = "0000-0002-8375-5542")),
    person(given = "University of Warwick",
           role=c("cph")),
    person(given = "Oxford Research Software Engineering",
           role=c("cph")))
Description: Implements the Adaptive Multiple Importance Sampling
        (AMIS) algorithm, as described by Retkute et al. (2021,
        <doi:10.1214/21-AOAS1486>), to estimate key epidemiological
        parameters by combining outputs from a geostatistical model of
        infectious diseases (such as prevalence, incidence, or relative
        risk) with a disease transmission model. Utilising the
        resulting posterior distributions, the package enables forward
        projections at the local level.
Acknowledgements: This work was supported by the NTD Modelling
        Consortium grant INV-030046, funded by the Bill & Melinda Gates
        Foundation.
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: Hmisc, mclust, mnormt, Rcpp, weights
LinkingTo: Rcpp, RcppArmadillo
Depends: R (>= 4.1)
Suggests: knitr, ggplot2, patchwork, rmarkdown, sf, viridis
VignetteBuilder: knitr
URL: https://github.com/drsimonspencer/AMISforInfectiousDiseases-dev
BugReports: https://github.com/drsimonspencer/AMISforInfectiousDiseases-dev/issues
License: MIT + file LICENSE
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libx11-dev
        zlib1g-dev
Repository: https://drsimonspencer.r-universe.dev
Date/Publication: 2026-07-06 23:11:52 UTC
RemoteUrl:
        https://github.com/drsimonspencer/amisforinfectiousdiseases-dev
RemoteRef: HEAD
RemoteSha: d640415fcff6003cd7e1f18cc3e11c426445431c
NeedsCompilation: yes
Packaged: 2026-07-07 00:12:51 UTC; root
Author: Evandro Konzen [aut] (ORCID: <https://orcid.org/0000-0002-6275-1681>),
  Renata Retkute [aut] (ORCID: <https://orcid.org/0000-0002-3877-6440>),
  Raiha Browning [aut] (ORCID: <https://orcid.org/0000-0002-6175-2244>),
  Thilbault Lestang [aut],
  Simon Spencer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8375-5542>),
  University of Warwick [cph],
  Oxford Research Software Engineering [cph]
Maintainer: Simon Spencer <s.e.f.spencer@warwick.ac.uk>